Check difference of two liger command

Usage

commandDiff(object, cmd1, cmd2)

Arguments

object: liger object
cmd1, cmd2: Exact string of command labels. Available options could be viewed with running commands(object).

Value

If any difference found, a character vector summarizing all differences

Examples

pbmc <- normalize(pbmc)
#> ℹ Normalizing datasets "ctrl"
#> ℹ Normalizing datasets "stim"
#> ✔ Normalizing datasets "stim" ... done
#> 
#> ℹ Normalizing datasets "ctrl"

#> ✔ Normalizing datasets "ctrl" ... done
#> 
pbmc <- normalize(pbmc, log = TRUE, scaleFactor = 1e4)
#> ℹ Normalizing datasets "ctrl"
#> ℹ Normalizing datasets "stim"
#> ✔ Normalizing datasets "stim" ... done
#> 
#> ℹ Normalizing datasets "ctrl"

#> ✔ Normalizing datasets "ctrl" ... done
#> 
cmds <- commands(pbmc)
commandDiff(pbmc, cmds[1], cmds[2])
#> [1] "Argument not found in `x`: log"        
#> [2] "Argument not found in `x`: scaleFactor"