ligerCommand object: Record the input and time of a LIGER function call

Usage

# S4 method for ligerCommand
show(object)

Arguments

object: A ligerCommand object

Slots

funcName: Name of the function
time: A time stamp object
call: A character string converted from system call
parameters: List of all arguments except the liger object. Large object are summarized to short string.
objSummary: List of attributes of the liger object as a snapshot when command is operated.
ligerVersion: Character string converted from packageVersion("rliger").
dependencyVersion: Named character vector of version number, if any dependency library has a chance to be included by the function. A dependency might only be invoked under certain conditions, such as using an alternative algorithm, which a call does not actually reach to, but it would still be included for this call.

Examples

pbmc <- normalize(pbmc)
#> ℹ Normalizing datasets "ctrl"
#> ℹ Normalizing datasets "stim"
#> ✔ Normalizing datasets "stim" ... done
#> 
#> ℹ Normalizing datasets "ctrl"

#> ✔ Normalizing datasets "ctrl" ... done
#> 
cmd <- commands(pbmc, "normalize")
cmd
#> A liger command record, performed at 10-25-2024 15:12:28 EDT 
#> Call: normalize.liger(pbmc) 
#> Parameters:
#>     useDatasets : "ctrl", "stim" 
#>     verbose : TRUE