mergeSparseAll
takes in a list of DGEs, with genes as
rows and cells as columns, and merges them into a single DGE. Also adds
libraryNames
to colnames from each DGE if expected to be overlap
(common with 10X barcodes). Values in rawData
or normData
slot of a ligerDataset object can be processed with this.
For a list of dense matrices, usually the values in scaleData
slot of
a ligerDataset object, please use mergeDenseAll
which
works in the same way.
Usage
mergeSparseAll(
datalist,
libraryNames = NULL,
mode = c("union", "intersection")
)
mergeDenseAll(datalist, libraryNames = NULL)
Arguments
- datalist
List of dgCMatrix for
mergeSparseAll
or a list of matrix formergeDenseAll
.- libraryNames
Character vector to be added as the prefix for the barcodes in each matrix in
datalist
. Length should match with the number of matrices. DefaultNULL
do not modify the barcodes.- mode
Whether to take the
"union"
or"intersection"
of features when merging. Default"union"
.