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Access ligerATACDataset peak data

Source: R/generics.R, R/liger-methods.R, R/ligerDataset_subclass-methods.R
peak.Rd

Similar as how default ligerDataset data is accessed.

Usage

rawPeak(x, dataset)

rawPeak(x, dataset, check = TRUE) <- value

normPeak(x, dataset)

normPeak(x, dataset, check = TRUE) <- value

# S4 method for liger,character
rawPeak(x, dataset)

# S4 method for liger,character
rawPeak(x, dataset, check = TRUE) <- value

# S4 method for liger,character
normPeak(x, dataset)

# S4 method for liger,character
normPeak(x, dataset, check = TRUE) <- value

# S4 method for ligerATACDataset,missing
rawPeak(x, dataset = NULL)

# S4 method for ligerATACDataset,missing
rawPeak(x, dataset = NULL, check = TRUE) <- value

# S4 method for ligerATACDataset,missing
normPeak(x, dataset = NULL)

# S4 method for ligerATACDataset,missing
normPeak(x, dataset = NULL, check = TRUE) <- value

Arguments

x

ligerATACDataset object or a liger object.

dataset

Name or numeric index of an ATAC dataset.

check

Logical, whether to perform object validity check on setting new value.

value

dgCMatrix-class matrix.

Value

The retrieved peak count matrix or the updated x object.