Create quaternary simplex plot with pre-calculated similarity matrix

Usage

# S3 method for class 'simMat'
plotQuaternary(
  x,
  veloMat = NULL,
  nGrid = 10,
  radius = 0.2,
  dotSize = NULL,
  colorArg = NULL,
  labelColors = c("#3B4992FF", "#EE0000FF", "#008B45FF", "#631879FF"),
  arrowLinewidth = NULL,
  arrowAngle = 20,
  arrowLen = 0.1,
  vertexLabelSize = NULL,
  edgeLinewidth = 1,
  title = NULL,
  titleSize = 1,
  titleColor = "black",
  theta = 20,
  phi = 0,
  interactive = TRUE,
  ...
)

Arguments

x: simMat object, n cells by 4 vertices, each row summing to 1.
veloMat: Aggregated velocity matrix. Output of aggrVeloGraph.
nGrid: Number of grids along the x-axis of the tetrahedron. Default 10.
radius: Arrow length of unit velocity. Lower this when arrows point outside of the tetrahedron. Default 0.2.
dotSize: Size of each dot. Default 0.6 for static figure, and 4 for interactive view.
colorArg: A "colorArg" object, internally prepared by plotQuaternary.default. Default NULL.
labelColors: Colors of the vertex labels. Default c("#3B4992FF", "#EE0000FF", "#008B45FF", "#631879FF") (blue, red, green and purple).
arrowLinewidth: Arrow aesthetics. Default 1.6 for interactive view, 0.6 for static figure.
arrowAngle, arrowLen: Arrow aesthetics passed to TODOOOO grid::arrow. The length of the arrow will be internally converted to unit onject in inches. Default 20 and 0.1.
vertexLabelSize: Numeric, size of vertex text label relative to default size. Default 1.
edgeLinewidth: Controls the linewidth of the edges of the tetrahedron. Default 1.
title: Title text of the plot. Default NULL.
titleSize, titleColor: Setting on the main title text. Default 1, and "black".
theta, phi: Numeric scalar. The angles defining the viewing direction. theta gives the azimuthal direction and phi the colatitude. Default 20 and 0.
interactive: Logical. Whether to display plotly interactive view. Default TRUE.
...: Not used

Value

A "quatPlot" object, can be displayed by printing.