Create GIF image for dynamic rotating view of 3D quaternary simplex plot
Source:R/quaternary.R
writeQuaternaryGIF.Rd
Create GIF image for dynamic rotating view of 3D quaternary simplex plot
Usage
writeQuaternaryGIF(
x,
...,
cluster = NULL,
filename = NULL,
fps = 10,
degreePerFrame = 10,
width = 5,
height = 5,
res = 100
)
Arguments
- x
Input object that
plotQuaternary
accepts.- ...
All other arguments needed for
plotQuaternary
. Must be specified with exact argument names instead of a positional manner.- cluster
One cluster that exists in
clusterVar
if users need to view the plot for a specific group. DefaultNULL
plot all cells.- filename
Output GIF image file path. Default
NULL
does not write to file.- fps
Number of frame per second, must be a factor of 100. Default
10
.- degreePerFrame
Number of degree that the tetrahedron is rotated per frame. Default
10
.- width, height, res
grDevices::png
parameters to set figure size and resolutation. Width and Height are in inches. Default5
,5
,100
.
Value
A object of class magick-image
that can be shown in the Viewer
panel in RStudio or equivalent display device. If filename
is
specified, the GIF image will be written to the file path.
Examples
gene <- selectTopFeatures(rnaRaw, rnaCluster, c("RE", "OS", "CH", "ORT"))
#> Selected 30 features for "CH".
#> Selected 30 features for "ORT".
#> Selected 30 features for "OS".
#> Selected 30 features for "RE".
# \donttest{
writeQuaternaryGIF(rnaRaw, clusterVar = rnaCluster, features = gene,
vertices = c("RE", "OS", "CH", "ORT"),
gifPath = tempfile(fileext = ".gif"))
#> ℹ Assembling frames
#> ✔ Assembling frames ... done
#>
#> # A tibble: 37 × 7
#> format width height colorspace matte filesize density
#> <chr> <int> <int> <chr> <lgl> <int> <chr>
#> 1 gif 500 500 sRGB TRUE 0 72x72
#> 2 gif 500 500 sRGB TRUE 0 72x72
#> 3 gif 500 500 sRGB TRUE 0 72x72
#> 4 gif 500 500 sRGB TRUE 0 72x72
#> 5 gif 500 500 sRGB TRUE 0 72x72
#> 6 gif 500 500 sRGB TRUE 0 72x72
#> 7 gif 500 500 sRGB TRUE 0 72x72
#> 8 gif 500 500 sRGB TRUE 0 72x72
#> 9 gif 500 500 sRGB TRUE 0 72x72
#> 10 gif 500 500 sRGB TRUE 0 72x72
#> # ℹ 27 more rows
# }